MCMCvariables Struct Reference

#include <SPINspiral.h>

Data Fields
int	maxnPar
int	nMCMCpar
int	nInjectPar
int	iIter
int	nParFit
int	nTemps
int	iTemp
int	networkSize
int	mcmcWaveform
double	mcmcPNorder
int	injectSignal
int	injectionWaveform
double	injectionPNorder
int	nIter
int	thinOutput
int	thinScreenOutput
int	adaptiveMCMC
double	acceptRateTarget
double	minlogL
double	decreaseSigma
double	increaseSigma
int	correlatedUpdates
int	nCorr
int	prMatrixInfo
double	annealTemp0
int	annealNburn
int	annealNburn0
int	parallelTempering
double	maxTemp
int	saveHotChains
int	prParTempInfo
double	chTemp
double	tempOverlap
double	blockFrac
double	corrFrac
double	matAccFr
double	baseTime
int	priorSet
int	offsetMCMC
double	offsetX
double	geocentricTc
int	parNumber [20]
int	parID [20]
int	injID [20]
double	parBestVal [20]
int	parFix [20]
int	parStartMCMC [20]
double	injParVal [20]
double	parSigma [20]
int	priorType [20]
double	priorBoundLow [20]
double	priorBoundUp [20]
int	parDBn
char	parName [200][99]
char	parAbrev [200][99]
char	parAbrv [200][99]
int	parDef [200]
int	mcmcParUse [200]
int	injParUse [200]
int	parRevID [200]
int	injRevID [200]
int	beVerbose
double *	histMean
double *	histDev
int *	corrUpdate
int *	acceptElems
double	tempLadder [99]
double *	tempAmpl
double *	logL
double *	nlogL
double *	dlogL
double *	maxdlogL
double *	corrSig
int *	swapTs1
int *	swapTs2
int *	acceptPrior
int *	iHist
int **	accepted
int **	swapTss
double **	param
double **	nParam
double **	maxLparam
double **	adaptSigma
double **	adaptSigmaOut
double **	adaptScale
double ***	hist
double ***	covar
int	seed
gsl_rng *	ran
FILE *	fout
FILE **	fouts

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Field Documentation

int MCMCvariables::maxnPar

Referenced by copyRun2MCMC().

int MCMCvariables::nMCMCpar

Referenced by allocateMCMCvariables(), arr2par(), CholeskyDecompose(), copyRun2MCMC(), correlatedMCMCupdate(), freeMCMCvariables(), matchBetweenParameterArrayAndTrueParameters(), MCMC(), par2arr(), startMCMCOffset(), swapChains(), uncorrelatedMCMCblockUpdate(), uncorrelatedMCMCsingleUpdate(), updateCovarianceMatrix(), writeChainInfo(), writeMCMCheader(), and writeMCMCoutput().

int MCMCvariables::nInjectPar

Referenced by allocateMCMCvariables(), copyRun2MCMC(), matchBetweenParameterArrayAndTrueParameters(), and MCMC().

int MCMCvariables::iIter

Referenced by MCMC(), uncorrelatedMCMCsingleUpdate(), updateCovarianceMatrix(), writeChainInfo(), and writeMCMCoutput().

int MCMCvariables::nParFit

Referenced by allocateMCMCvariables(), MCMC(), and updateCovarianceMatrix().

int MCMCvariables::nTemps

Referenced by allocateMCMCvariables(), copyRun2MCMC(), freeMCMCvariables(), MCMC(), setTemperatureLadder(), setTemperatureLadderOld(), swapChains(), updateCovarianceMatrix(), writeChainInfo(), and writeMCMCheader().

int MCMCvariables::iTemp

Referenced by arr2par(), correlatedMCMCupdate(), MCMC(), par2arr(), startMCMCOffset(), uncorrelatedMCMCblockUpdate(), uncorrelatedMCMCsingleUpdate(), updateCovarianceMatrix(), writeChainInfo(), and writeMCMCoutput().

int MCMCvariables::networkSize

Referenced by copyRun2MCMC(), correlatedMCMCupdate(), matchBetweenParameterArrayAndTrueParameters(), MCMC(), startMCMCOffset(), uncorrelatedMCMCblockUpdate(), and uncorrelatedMCMCsingleUpdate().

int MCMCvariables::mcmcWaveform

Referenced by copyRun2MCMC(), correlatedMCMCupdate(), matchBetweenParameterArrayAndTrueParameters(), MCMC(), startMCMCOffset(), uncorrelatedMCMCblockUpdate(), and uncorrelatedMCMCsingleUpdate().

double MCMCvariables::mcmcPNorder

Referenced by copyRun2MCMC().

int MCMCvariables::injectSignal

Referenced by copyRun2MCMC(), MCMC(), and startMCMCOffset().

int MCMCvariables::injectionWaveform

Referenced by copyRun2MCMC(), matchBetweenParameterArrayAndTrueParameters(), MCMC(), and startMCMCOffset().

double MCMCvariables::injectionPNorder

Referenced by copyRun2MCMC().

int MCMCvariables::nIter

Referenced by copyRun2MCMC(), MCMC(), and writeMCMCheader().

int MCMCvariables::thinOutput

Referenced by copyRun2MCMC(), and writeMCMCoutput().

int MCMCvariables::thinScreenOutput

Referenced by copyRun2MCMC(), startMCMCOffset(), and writeMCMCoutput().

int MCMCvariables::adaptiveMCMC

Referenced by copyRun2MCMC(), correlatedMCMCupdate(), MCMC(), and uncorrelatedMCMCsingleUpdate().

double MCMCvariables::acceptRateTarget

Referenced by copyRun2MCMC(), MCMC(), and uncorrelatedMCMCsingleUpdate().

double MCMCvariables::minlogL

Referenced by copyRun2MCMC(), correlatedMCMCupdate(), MCMC(), uncorrelatedMCMCblockUpdate(), and uncorrelatedMCMCsingleUpdate().

double MCMCvariables::decreaseSigma

Referenced by correlatedMCMCupdate(), and MCMC().

double MCMCvariables::increaseSigma

Referenced by correlatedMCMCupdate(), and MCMC().

int MCMCvariables::correlatedUpdates

Referenced by copyRun2MCMC(), and MCMC().

int MCMCvariables::nCorr

Referenced by allocateMCMCvariables(), copyRun2MCMC(), MCMC(), updateCovarianceMatrix(), and writeMCMCheader().

int MCMCvariables::prMatrixInfo

Referenced by copyRun2MCMC(), and updateCovarianceMatrix().

double MCMCvariables::annealTemp0

Referenced by copyRun2MCMC(), and MCMC().

int MCMCvariables::annealNburn

Referenced by copyRun2MCMC(), MCMC(), and writeMCMCheader().

int MCMCvariables::annealNburn0

Referenced by copyRun2MCMC(), and MCMC().

int MCMCvariables::parallelTempering

Referenced by copyRun2MCMC(), MCMC(), setTemperatureLadder(), and setTemperatureLadderOld().

double MCMCvariables::maxTemp

Referenced by copyRun2MCMC(), setTemperatureLadder(), setTemperatureLadderOld(), and writeMCMCheader().

int MCMCvariables::saveHotChains

Referenced by copyRun2MCMC(), MCMC(), writeMCMCheader(), and writeMCMCoutput().

int MCMCvariables::prParTempInfo

Referenced by copyRun2MCMC(), MCMC(), setTemperatureLadder(), setTemperatureLadderOld(), and writeChainInfo().

double MCMCvariables::chTemp

Referenced by copyRun2MCMC(), correlatedMCMCupdate(), MCMC(), uncorrelatedMCMCblockUpdate(), uncorrelatedMCMCsingleUpdate(), and writeChainInfo().

double MCMCvariables::tempOverlap

Referenced by MCMC(), and setTemperatureLadder().

double MCMCvariables::blockFrac

Referenced by copyRun2MCMC(), and MCMC().

double MCMCvariables::corrFrac

Referenced by copyRun2MCMC(), and MCMC().

double MCMCvariables::matAccFr

Referenced by copyRun2MCMC(), and updateCovarianceMatrix().

double MCMCvariables::baseTime

Referenced by copyRun2MCMC(), and MCMC().

int MCMCvariables::priorSet

int MCMCvariables::offsetMCMC

Referenced by copyRun2MCMC(), startMCMCOffset(), and writeMCMCheader().

double MCMCvariables::offsetX

Referenced by copyRun2MCMC(), and startMCMCOffset().

double MCMCvariables::geocentricTc

Referenced by copyRun2MCMC().

int MCMCvariables::parNumber[20]

Referenced by copyRun2MCMC().

int MCMCvariables::parID[20]

Referenced by copyRun2MCMC(), MCMC(), startMCMCOffset(), writeChainInfo(), writeMCMCheader(), and writeMCMCoutput().

int MCMCvariables::injID[20]

Referenced by copyRun2MCMC(), MCMC(), and startMCMCOffset().

double MCMCvariables::parBestVal[20]

Referenced by copyRun2MCMC(), MCMC(), and startMCMCOffset().

int MCMCvariables::parFix[20]

Referenced by CholeskyDecompose(), copyRun2MCMC(), correlatedMCMCupdate(), MCMC(), uncorrelatedMCMCblockUpdate(), uncorrelatedMCMCsingleUpdate(), and updateCovarianceMatrix().

int MCMCvariables::parStartMCMC[20]

Referenced by copyRun2MCMC(), and startMCMCOffset().

double MCMCvariables::injParVal[20]

Referenced by copyRun2MCMC(), matchBetweenParameterArrayAndTrueParameters(), MCMC(), and startMCMCOffset().

double MCMCvariables::parSigma[20]

Referenced by copyRun2MCMC(), MCMC(), and startMCMCOffset().

int MCMCvariables::priorType[20]

Referenced by copyRun2MCMC(), prior(), and sigmaPeriodicBoundaries().

double MCMCvariables::priorBoundLow[20]

Referenced by copyRun2MCMC(), prior(), and startMCMCOffset().

double MCMCvariables::priorBoundUp[20]

Referenced by copyRun2MCMC(), prior(), and startMCMCOffset().

int MCMCvariables::parDBn

Referenced by copyRun2MCMC().

char MCMCvariables::parName[200][99]

Referenced by copyRun2MCMC().

char MCMCvariables::parAbrev[200][99]

Referenced by copyRun2MCMC(), startMCMCOffset(), writeMCMCheader(), and writeMCMCoutput().

char MCMCvariables::parAbrv[200][99]

Referenced by copyRun2MCMC(), and writeChainInfo().

int MCMCvariables::parDef[200]

int MCMCvariables::mcmcParUse[200]

Referenced by copyRun2MCMC().

int MCMCvariables::injParUse[200]

Referenced by copyRun2MCMC(), MCMC(), and startMCMCOffset().

int MCMCvariables::parRevID[200]

Referenced by copyRun2MCMC().

int MCMCvariables::injRevID[200]

Referenced by copyRun2MCMC(), MCMC(), and startMCMCOffset().

int MCMCvariables::beVerbose

Referenced by copyRun2MCMC(), MCMC(), setTemperatureLadder(), setTemperatureLadderOld(), and startMCMCOffset().

double* MCMCvariables::histMean

Referenced by allocateMCMCvariables(), freeMCMCvariables(), and updateCovarianceMatrix().

double* MCMCvariables::histDev

Referenced by allocateMCMCvariables(), freeMCMCvariables(), updateCovarianceMatrix(), and writeChainInfo().

int* MCMCvariables::corrUpdate

Referenced by allocateMCMCvariables(), freeMCMCvariables(), MCMC(), updateCovarianceMatrix(), and writeChainInfo().

int* MCMCvariables::acceptElems

Referenced by allocateMCMCvariables(), freeMCMCvariables(), updateCovarianceMatrix(), and writeChainInfo().

double MCMCvariables::tempLadder[99]

Referenced by copyRun2MCMC(), MCMC(), setTemperatureLadder(), setTemperatureLadderOld(), swapChains(), and writeMCMCheader().

double* MCMCvariables::tempAmpl

Referenced by allocateMCMCvariables(), freeMCMCvariables(), MCMC(), setTemperatureLadder(), and setTemperatureLadderOld().

double* MCMCvariables::logL

Referenced by allocateMCMCvariables(), correlatedMCMCupdate(), freeMCMCvariables(), MCMC(), startMCMCOffset(), swapChains(), uncorrelatedMCMCblockUpdate(), uncorrelatedMCMCsingleUpdate(), and writeMCMCoutput().

double* MCMCvariables::nlogL

Referenced by allocateMCMCvariables(), correlatedMCMCupdate(), freeMCMCvariables(), MCMC(), uncorrelatedMCMCblockUpdate(), and uncorrelatedMCMCsingleUpdate().

double* MCMCvariables::dlogL

Referenced by allocateMCMCvariables(), freeMCMCvariables(), and MCMC().

double* MCMCvariables::maxdlogL

Referenced by allocateMCMCvariables(), freeMCMCvariables(), and MCMC().

double* MCMCvariables::corrSig

Referenced by allocateMCMCvariables(), correlatedMCMCupdate(), and freeMCMCvariables().

int* MCMCvariables::swapTs1

Referenced by allocateMCMCvariables(), freeMCMCvariables(), swapChains(), and writeChainInfo().

int* MCMCvariables::swapTs2

Referenced by allocateMCMCvariables(), freeMCMCvariables(), swapChains(), and writeChainInfo().

int* MCMCvariables::acceptPrior

Referenced by allocateMCMCvariables(), correlatedMCMCupdate(), freeMCMCvariables(), MCMC(), startMCMCOffset(), uncorrelatedMCMCblockUpdate(), and uncorrelatedMCMCsingleUpdate().

int* MCMCvariables::iHist

Referenced by allocateMCMCvariables(), freeMCMCvariables(), and MCMC().

int** MCMCvariables::accepted

Referenced by allocateMCMCvariables(), correlatedMCMCupdate(), freeMCMCvariables(), uncorrelatedMCMCblockUpdate(), uncorrelatedMCMCsingleUpdate(), writeChainInfo(), and writeMCMCoutput().

int** MCMCvariables::swapTss

Referenced by allocateMCMCvariables(), freeMCMCvariables(), swapChains(), and writeChainInfo().

double** MCMCvariables::param

Referenced by allocateMCMCvariables(), correlatedMCMCupdate(), freeMCMCvariables(), MCMC(), startMCMCOffset(), swapChains(), uncorrelatedMCMCblockUpdate(), uncorrelatedMCMCsingleUpdate(), and writeMCMCoutput().

double** MCMCvariables::nParam

Referenced by allocateMCMCvariables(), correlatedMCMCupdate(), freeMCMCvariables(), MCMC(), startMCMCOffset(), uncorrelatedMCMCblockUpdate(), and uncorrelatedMCMCsingleUpdate().

double** MCMCvariables::maxLparam

Referenced by allocateMCMCvariables(), freeMCMCvariables(), and MCMC().

double** MCMCvariables::adaptSigma

Referenced by allocateMCMCvariables(), freeMCMCvariables(), MCMC(), uncorrelatedMCMCblockUpdate(), and uncorrelatedMCMCsingleUpdate().

double** MCMCvariables::adaptSigmaOut

Referenced by allocateMCMCvariables(), correlatedMCMCupdate(), freeMCMCvariables(), and uncorrelatedMCMCsingleUpdate().

double** MCMCvariables::adaptScale

Referenced by allocateMCMCvariables(), freeMCMCvariables(), MCMC(), and uncorrelatedMCMCsingleUpdate().

double*** MCMCvariables::hist

Referenced by allocateMCMCvariables(), freeMCMCvariables(), MCMC(), and updateCovarianceMatrix().

double*** MCMCvariables::covar

Referenced by allocateMCMCvariables(), correlatedMCMCupdate(), freeMCMCvariables(), MCMC(), and updateCovarianceMatrix().

int MCMCvariables::seed

Referenced by copyRun2MCMC(), MCMC(), and writeMCMCheader().

gsl_rng* MCMCvariables::ran

Referenced by correlatedMCMCupdate(), freeMCMCvariables(), MCMC(), startMCMCOffset(), swapChains(), uncorrelatedMCMCblockUpdate(), and uncorrelatedMCMCsingleUpdate().

FILE* MCMCvariables::fout

FILE** MCMCvariables::fouts

Referenced by MCMC(), writeMCMCheader(), and writeMCMCoutput().

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The documentation for this struct was generated from the following file:

• include/SPINspiral.h (SPINspiral version 0.5.1, revision 275)